CIMMYT Ethiopia
Genotype x environment interaction and GWAS in a durum panel under yield potential, drought stress, and heat stress conditions
GWAS identifies common loci under stressed and non-stressed environments.
Agricultural data for Ethiopia, gathered from research institutes and government sources into one searchable catalogue.
1–8 of 8 datasets
CIMMYT Ethiopia
GWAS identifies common loci under stressed and non-stressed environments.
CIMMYT Ethiopia
Genome-wide association study (GWAS) was conducted for grain yield (YLD) and yield components on a wheat association mapping initiative (WAMI) population of 287 elite, spring wheat lines grown under temperate irrigated high-yield potential condition in Ciudad Obregón, Mexico, during four crop cycles (from 2009–2010 to 2012–2013). Raw data for grain yield, yield components and physiological traits are provided.
CIMMYT Ethiopia
The Elite Spring Wheat Yield Trial (ESWYT) is a replicated yield trial that contains spring bread wheat (Triticum aestivum) germplasm adapted to Mega-environment 1 (ME1) which represents the optimally irrigated, low rainfall areas. Major stresses include leaf, stem and yellow rusts, Karnal bunt, and lodging. Representative areas include the Gangetic Valley (India), the Indus Valley (Pakistan), the Nile Valley (Egypt), irrigated river valleys in parts of China (e.g. Chengdu), and the Yaqui Valley (Mexico). This ME encompasses 36 million hectares spread primarily over Asia and Africa between 350S -350N latitudes. White (amber)-grained types are preferred by consumers of wheat in the vast majority of the areas. It is distributed to upto 200 locations and contains 50 entries.
CIMMYT Ethiopia
The Semi-Arid Wheat Yield Trial (SAWYT) is a replicated yield trial that contains spring bread wheat (Triticum aestivum) germplasm adapted to low rainfall, drought prone environments typically receiving less than 500 mm of water available during the cropping cycle. The combination of water-use efficiency and water responsive broad adaptation plus yield potential is important in drought environments where rainfall is frequently erratic across and within years. Stripe rust, leaf rust and stem rust, root rots, nematodes, and bunts are the key biotic constraints. Typical target environments include winter rain or Mediterranean-type drought associated with post-flowering moisture stress and heat stress such as those found at Aleppo (Syria), Settat (Morocco) and Marcos Juarez (Argentina), all classified by CIMMYT within Wheat Mega Environment 4 (Low rainfall, semi-arid environment; ME4: SA). It is distributed to 150 locations, and contains 50 entries.
CIMMYT Ethiopia
Increases in genetic gains in grain yield can be accelerated through genomic selection (GS). In the present study seven genomic prediction models under two cross validation scenarios were evaluated on the Wheat Association Mapping Initiative population of 287 advanced elite lines phenotyped for grain yield (GY), thousand grain weight (GW), grain number (GN), and thermal time for flowering (TTF) in 18 environments (year location combinations) in major wheat producing countries in 2010 and 2011. The seven genomic prediction models tested herein: four of them (model 1 (L+E), model 2 (L+E+G), model 3 (L+E+A) , and model 4 (L+E+A+G )) with main effects (lines (L), environme nts (E), genetic relationship matrix (G), and pedigree derived matrix (A) and three of them (model 5 (L+E+A+AE), model 6 (L+E+G+GE), and model 7 (L+E+G+A+AE+GE)) with interaction effects between A×E, G×E, and both together with main effects. Moreover, two cross validation (CV) schemes were applied: (1) predicting lines’ performance at untested sites (CV1) and (2) predicting the lines’ performance at some sites with the performance from other sites (CV2). The genomic prediction models with interaction terms, models 6 and 7 had the highest prediction accuracy on average for CV1 for GY (0.31), GN (0.30), and model 5 for TTF (0.26). Models 3 and 7 2, were the best model for GW (0.45 each) under CV1 scenario. For CV2, the prediction accuracy was generally high for the model with interaction terms models 5, 6, and 7 for GY (0.39), model 5 and 7 for GN (0.43. For GW and TTF models prediction accuracy were similar. Results indicated genomic selection can be used to predict genotype by environment (G×E) interaction in multi environment trials to select varieties for release as well as for accelerated breeding.
CIMMYT Ethiopia
In sub-Saharan Africa, maize is a staple crop but yields remain sub-optimal. A novel hybrid seed technology offers the opportunity to reduce seed production costs and increase yields. This dataset contains data from on-farm and on-station trials collected in 2017 to 2019 in South Africa, Kenya and Zimbabwe to assess this hybrid seed production technology. The results of the analysis are presented in the accompanying article.
CIMMYT Ethiopia
We studied a RIL population of 276 entries derived from a cross between SYN-D × Weebill 1. SYN-D (Croc 1/Aegilops Squarrosa (224)//Opata) is a synthetic derived hexaploid wheat with dark green broad leaves without wax. The RILs did not segregate for Rht-B1, Rht-D1, Ppd-A1, Ppd-D1, Vrn-A1, Vrn-A1, Vrn-D1, and Eps-D1 genes and showed a narrow range of phenology, which avoids the confounding effect of phenology to identify QTL that may otherwise be masked by crop development. The RILs population was phenotyped in a randomized lattice design with two replications under four environments -drought (2009-2010, D10), heat (2009-2010, H10), heat + drought (2011-2012 and 2012-2013, HD12 and HD13)- at the Campo Experimental Norman E. Borlaug (CENEB), CIMMYT’s experimental station at Ciudad Obregón, Sonora, Northwest Mexico (27.20°N, 109.54°W, 38 masl). Drought stress (D) was applied by normal planting (late November) with significantly reduced irrigation (total water supply 700 mm) to avoid the effect of drought; the combined stress (H+D) was applied by delayed planting date (late February) with reduced irrigation (total water supply < 200 mm).
CIMMYT Ethiopia
The Semi-Arid Wheat Yield Trial (SAWYT) is a replicated yield trial that contains spring bread wheat (Triticum aestivum) germplasm adapted to low rainfall, drought prone environments typically receiving less than 500 mm of water available during the cropping cycle. The combination of water-use efficiency and water responsive broad adaptation plus yield potential is important in drought environments where rainfall is frequently erratic across and within years. Stripe rust, leaf rust and stem rust, root rots, nematodes, and bunts are the key biotic constraints. Typical target environments include winter rain or Mediterranean-type drought associated with post-flowering moisture stress and heat stress such as those found at Aleppo (Syria), Settat (Morocco) and Marcos Juarez (Argentina), all classified by CIMMYT within Wheat Mega Environment 4 (Low rainfall, semi-arid environment; ME4: SA). It is distributed to 150 locations, and contains 50 entries.